Simple backup script for remotely backing up databases

This backup script is actually a small modification of another backup script available in Google. I am not able to get that URL to mark/link reference. Only modification I added is a four liner to remove a week old backup automatically. You may also see http://www.supportsages.com/blog/2011/05/applying-wildcards-in-grant-option-of-mysql/ as well. Indenting in python is lost, will fix tomorrow

#!/usr/bin/env python
import ConfigParser
import os
import time

# Variable Definition
username = 'cpdbbackups'
password = 'p@ssw0Rd'
hostname = 're.mo.te.ip
backupfolder = '/home/dbbackups/servername'

filestamp = time.strftime('%Y-%m-%d-%H')
deletetime = time.time() - 7 * 86400

# Delete old files

for backup_file in os.listdir (backupfolder):
 full_file_path = os.path.join(backupfolder, backup_file)
 if os.path.getmtime(full_file_path) < deletetime:
 os.unlink(full_file_path)

# Get a list of databases with :
database_list_command="mysql -u%s -p%s -h %s --silent -N -e 'show databases'" % (username, password, hostname)
for database in os.popen(database_list_command).readlines():
 database = database.strip()

 if database == 'information_schema':
 continue
 filename = "%s/%s-%s.sql" % (backupfolder, database, filestamp)
 os.popen("mysqldump -u%s -p%s -h %s -e --opt -c %s | gzip -c > %s.gz" % (username, password, hostname, database, filename))

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Applying wildcards in GRANT option of MySQL

We had this particular requirement of creating a database user to be used to backup only the cPanel databases. Only recently the database mapping has been introduced by cPanel which allows the clients to create databases without the _ . However on all our client servers, we insist to have the old style with every database has Prefixing On.

Creating the database user to backup only the cPanel databases, means matching the databases with an underscore (_) in its name and that resulted in this particular SQL command to be executed as root user.

GRANT ALL PRIVILEGES ON `%\_%`.* TO `cpdbbackups`@`re.mo.te.ip` IDENTIFIED BY 'p@ssw0Rd' WITH GRANT OPTION;

Read more about the cPanel’s DB mapping at http://www.cpanel.net/blog/integration/2010/05/more-details-about-db-mapping.html

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MySQL for Beginners

In this post, I’ll explain some basic MySQL tips that would be very useful for beginners

Reset MySQL root password

Log in as Root and Stop the MySQL daemon. Then Start the MySQL daemon and skip the grant tables which store the passwords.

# /etc/init.d/mysql stop

# mysqld_safe --skip-grant-tables

# mysql -u root

mysql> use mysql;

Now you should be able to connect to mysql without a password. If not, it might be some other issues. Execute the command to reset the password

mysql> update user set Password=PASSWORD('new-password') where user='root';
mysql> flush privileges;
mysql> exit

After this you need to kill the running mysqld and restart it normally.

Creation of MySQL database, user and access rights

It should be very easy to create a database through cpanel or some other panel. But if you are on your own with only Shell access, try this :

# mysql -u root -p
 mysql> use mysql;
 mysql> INSERT INTO db (Host,Db,User,Select_priv,Insert_priv,Update_priv,Delete_priv,Create_priv,Drop_priv) VALUES  ('%','databasename','username','Y','Y','Y','Y','Y','N');
 mysql> flush privileges;

Or you can use

mysql> grant all privileges on databasename.* to username@localhost;
mysql> flush privileges;

MySQLdump and Restore

The mysqldump client is a database backup.  It can be used to dump a database or a collection of databases for backup or transfer to another SQL server (not necessarily a MySQL server). The dump typically contains SQL statements to create the table, populate it, or both.

Creating a Mysqldump is quite easy. If you know the database name, say database :

# mysqldump database > database.sql

When restoring a Database, make sure you login as the user. In other words, do not restore a database with root privileges. It may cause real damage. Assuming that you are logged in as the user

<strong> </strong>
mysql> use dbname; //Which is the database which the backup has to be restored to
mysql > source olddb.sql; //Backup

Repair a corrupted Database

Switch to the database directory which is having issues with, Like :

# cd /var/lib/mysql/database

Stop the MySQL server

# /etc/init.d/mysql stop

Check the tables

# myisamchk *.MYI

Repair the tables

# myisamchk -r *.MYI

Start the MySQL server

# /etc/init.d/mysql start

phpMyadmin

phpMyAdmin is an open source tool written in PHP intended to handle the administration of MySQL over the World Wide Web. It can perform various tasks such as creating, modifying or deleting databases, tables, fields or rows; executing SQL statements; or managing users and permissions.

If you are having a cPanel or WHM interface, its quite easy to manage a database. In cPanel interface, go to Databases section

This is the main phpMyadmin page.

In WHM, at SQL Services you can perform a variety of options. As mentioned earlier, the database repair option (for corrupted databases) can be performed here also. Access the option ‘Repair a Database’

Select the Database name and Click Repair Database.

These are quite simple tasks associated with MySQL operations.

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PostgreSQL for the sage – Must know basics for the system administrators

PostgreSQL or Postgres is an object-relational database management system (ORDBMS). Unlike MySQL, PostgreSQL is not controlled by any single company, it is a community developed project. It is a advanced version of the ‘Ingres’ Database project (which is how the project gets the name post-ingres or postgres ).

Postgres is one of the best open-source database alternative which is fully object oriented and transactions compliant. It has stored procedures, multiple views and a huge set of datatypes. Some of the other notable features are as follows.

Objects and Inheritance

Database consists of objects and the database administrators can design custom or user-defined objects for the tables. Inheritance is another feature. Tables can be set to inherit their characteristics from a “parent” table.

Functions

Functions can be used in Postgres. These can be written in the postgres’ own procedural language called ‘PL/pgSQL’ which resembles Oracle’s procedural language ‘PL/SQL’ or any other common scripting languages which support posgtres’ procedural language like PL/Perl, plPHP, PL/Python, PL/Ruby etc. Run the following in the psql client to determine if functions is enabled:

SELECT true FROM pg_catalog.pg_language WHERE lanname = 'plpgsql'; 

To create user-defined functions we use the CREATE OR REPLACE FUNCTION command. Example:

CREATE OR REPLACE FUNCTION fib (

fib_for integer

) RETURNS integer AS $$

BEGIN

IF fib_for < 2 THEN

RETURN fib_for;

END IF;

RETURN fib(fib_for - 2) + fib(fib_for - 1);

END;

$$ LANGUAGE plpgsql;

Indexes

An index is like a summary of a certain portion of the table. It is an optimization technique which increases speed of accessing records from a database. PostgreSQL supports indexes like Btree, hash etc. User-defined index methods can also be created. Indexes are created on tables with respect to a particular field (based on which there are a number of queries). As an example for a table:

CREATE TABLE name (

id integer,

fname varchar

lname varchar

);

To create an index on table name with respective to the field id (as there are many queries on this table requesting for firstname or lastname from the id provided), we use the index:

CREATE INDEX name_id_index ON name (id);

Triggers

Triggers are events or functions run upon the action of certain SQL statements which modify data in some records. Depending on the kind of modification we can have multiple triggers in a database. Postgres supports multiple triggers written in PL/PgSQL or it’s scripting counterparts like PL/Python. The trigger function must be defined before the trigger can be created. The trigger function must be declared as a function taking no arguments and returning type trigger. CREATE TRIGGER command is used to declare triggers.

Concurrency

PostgreSQL ensures concurrency with the help of MVCC (Multi-Version Concurrency Control), which gives the database user a “snapshot” of the database, allowing changes to be made without being visible to other users until a transaction is committed.

PostgreSQL’s MVCC keeps all of the versions of the data together in the same partition in the same table. By identifying which rows were added by which transactions, which rows were deleted by which transactions, and which transactions have actually committed, it becomes a straightforward check to see which rows are visible for which transactions.

Inorder to accomplish this, Rows of a table are stored in PostgreSQL as a tuple. Two fields of each tuple are xmin and xmax. Xmin is the transaction ID of the transaction that created the tuple. Xmax is the transaction ID of the transaction that deleted it (if any).

Along with the tuples in each table, a record of each transaction and its current state (in progress, committed, aborted) is kept in a universal transaction log.

When data in a table is selected, only those rows that are created and not destroyed are seen. That is, each row’s xmin is observed. If the xmin is a transaction that is in progress or aborted, then the row is invisible. If the xmin is a transaction that has committed, then the xmax is observed. If the xmax is a transaction that is in progress or aborted and not the current transaction, or if there is no xmax at all, then the row is seen. Otherwise, the row is considered as already deleted.

Insertions are straightforward. The transaction that inserts the tuple simply creates it with the xmax blank and the xmin set to its transaction ID. Deletions are also straightforward. The tuple’s xmax is set to the current transaction. Updates are no more than a concurrent insert and delete.

Views

A view is a table which does not exist in the database. It is a virtual table created from fields in various tables and is joined together based on some criteria. Views can be used in place of tables and will accomplish the task same as that of a table. The CREATE VIEW statement is used to accomplish this eg:

CREATE VIEW best_sellers AS

SELECT * FROM publishers WHERE demand LIKE 'high';

Foreign Keys

The primary key used in one table which is used to refer to the records in a second table is called the foreign key of the second table.

CREATE TABLE products (
    product_no integer PRIMARY KEY,
    name text,
    price numeric
);
CREATE TABLE orders (
    order_id integer PRIMARY KEY,
    product_no integer REFERENCES products (product_no),
    quantity integer
);

Here product_no is the foreign key in the second table created. The foreign key field may have values which are repeated unlike primary keys.

Files Users and Configuration

The main configuration file of Postgres is postgresql.conf. This can be located in the ‘data’ directory. It may be present either in /var/lib (/var/lib/pgsql/data/postgresql.conf) or /usr/local (/usr/local/pgsql/data/postgresql.conf). Temporary changes to the configurations can be made using postmaster command.

The init script that starts the postgres service is /etc/init.d/postgresql . It runs a number of child processes concurrently. The postgres server process is postmaster. These processes and files associated with PosgreSQL are owned by the user/group postgres. The default port used for database connections is 5432

The user postgres is the PostgreSQL database superuser. We can create a number of super users for the database (this accomplished by the create role command ), however, the default super user is postgres. The postgres user has the privilege to access all the databases and files in the server (Unless the user root is created in postgres as a superuser).

Client Authentication is controlled by the file pg_hba.conf in the data directory, e.g., /var/lib/pgsql/data/pg_hba.conf. (HBA stands for host-based authentication.)

Each record specifies a connection type, a client IP address range (if relevant for the connection type), a database name or names, and the authentication method to be used for connections matching these parameters.A record is typically in one of two forms:

local database authentication-method [ authentication-option ]

host database IP-address IP-mask authentication-method [ authentication-option ]

local : This record pertains to connection attempts over Unix domain sockets.

host : This record pertains to connection attempts over TCP/IP networks.

database : Specifies the database that this record applies to. The value all specifies that it applies to all databases, while the value sameuser identifies the database with the same name as the connecting user.

authentication methods

trust: The connection is allowed unconditionally.

reject: The connection is rejected unconditionally.

password: The client is required to supply a password which is required to match the database password that was set up for the user.

md5: Like the password method, but the password is sent over the wire encrypted using a simple challenge-response protocol.

ident: This method uses the “Identification Protocol” as described in RFC 1413. It may be used to authenticate TCP/IP or Unix domain socket connections, but its reccomended use is for local connections only and not remote connections.

Front-ends

The minimalistic front-end for PostgreSQL is the psql command-line. It can be used to enter SQL queries directly, or execute them from a file. phpPgAdmin is a web-portal used for PostgreSQL administration written in PHP and based on the popular phpMyAdmin. Likewise pgAdmin is a graphical front-end administration tool for PostgreSQL, which has support on multiple platforms. The latest stable version of the same is pgAdmin III.

Some administration related commands

Command to login to psql database mydb as user myuser:

psql -d mydb -U myuser

Command to login to psql database mydb as user myuser on a different host myhost:

psql -h myhost -d mydb -U myuser

If the port the server runs is different we use -p [port number] . Upon entering the psql shell the prompt will show the database name currently being used. In the above example it will show

mydb=> (if logged in as an ordinary user )

mydb=# (if logged in as a super user like postgres)

Create a PostgreSQL user

There are two ways to create a postgres database user. The only user initially allowed to create users is postgres. So one has to switch to this user before creating other users with varying privileges.

1. Creating the user in the shell prompt, with createuser command.

switch to the postgres user with:

su - postgres

createuser tom

Shall the new role be a superuser? (y/n) n

Shall the new role be allowed to create databases? (y/n) y

Shall the new role be allowed to create more new roles? (y/n) n

2. Creating the user in the PSQL prompt, with CREATE USER command.

switch to the postgres user with:

su - postgres

create user mary with password 'marypass';

Creating and deleting a PostgreSQL Database

There are two way to create databases.

1. Creating database in the PSQL prompt, with createuser command.

CREATE DATABASE db1 WITH OWNER tom;

2. Creating database in the shell prompt, with createdb command.

createdb db2 -O mary

To delete an entire database from within the psql prompt do :

DROP DATABASE db1;

Determining execution time of a query

Turn on timing with

\timing

Now execute the qery:

SELECT * from db1.employees ;

Time: 0.065 ms

Calculate postgreSQL database size in disk

SELECT pg_database_size('db1');

to get the values in human readable format

SELECT pg_size_pretty(pg_database_size('db1'));

to calculate postgreSQL table size in disk

SELECT pg_size_pretty(pg_total_relation_size(‘big_table’));

Slash commands used in psql

To list all slash commands and thier purpose. Login to psql and issue to the command \? . Some of the most commonly used slash commands are the following:

List databases	\l
System tables	\dS
Types	\dT
Functions	\df
Operators	\do
Aggregates	\da
Users	\du
Quit from psql	\q
Connect to different database db2	\c db2
Describe Table/index/view/sequence	\d

The below can be used with a specific table/index/view name for description of the specific table/index/view

Tables	\dt
Indexes	\di
Sequences	\ds
Views	\dv

Useful Bash commands

Bash command to list all the postgresql databases:

psql -l #This can be run as a unix user who is also a super user in postgresql

Indirect bash command to list all the postgresl users:

psql -c '\du' #-c is used to run an internal or sql command in psql shell

Backing up and restoring databases

To dump the database to an sql file use the bash command:

pg_dump mydb > db.out

To restore a database from an sql backup file (via bash)

psql -d newdb -f backupdb.out

or

psql -f backupdb.out newdb

(here the database newdb must be already created and the file backupdb.out must be present in the current directory)

To take the backup of all the Postgres databases in the server:

pg_dumpall > /var/lib/pgsql/backups/dumpall.sql

(Only possible with the postgres or the database superuser )

Resetting database user’s password

To change the password for a database user (say ‘thomas’):

ALTER USER thomas WITH PASSWORD 'newpassword';

This same command can be used to reset the password for the postgresql super user postgres, but in this case, you will have to enable password less login for postgres user by adding the following line to the top of the file pg_hba.conf in the data directory of postgres. Once the password is reset this line can be removed:

local	all	postgres	trust

Next we issue the same command but for the user postgres

ALTER USER postgres WITH PASSWORD 'newpassword';

To create a super user via bash with multiple roles

createuser -sPE mysuperuser

Instead of this we can also use the below psql shell command:

CREATE ROLE mysuperuser2 WITH SUPERUSER CREATEDB CREATEROLE LOGIN ENCRYPTED PASSWORD 'mysuperpass2';

Physical database files in postgres

The files in data/base are named by the oid (Object Identifier) of the database record in

pg_database, like this:

cd /var/lib/pgsql/data/base

ls -l

total 33

drwx------ 22 postgres postgres 4096 Jul 23 20:06 ./

drwx------ 11 postgres postgres 4096 Aug  1 05:59 ../

drwx------  2 postgres postgres 4096 Jun 20 09:32 1/

drwx------  2 postgres postgres 4096 Mar  3 13:36 10792/

drwx------  2 postgres postgres 4096 Jun 20 15:09 10793/

drwx------  2 postgres postgres 4096 May 27 01:40 16497/

drwx------  2 postgres postgres 4096 May 27 01:40 16589/

drwx------  2 postgres postgres 4096 Jun 20 10:28 16702/

drwx------  2 postgres postgres 4096 May 27 01:40 16764/

drwx------  2 postgres postgres 4096 May 27 01:40 16785/

drwx------  2 postgres postgres 4096 Aug  1 04:37 16786/

drwx------  2 postgres postgres 4096 Aug  1 04:36 19992/

drwx------  2 postgres postgres 4096 May 27 01:40 19997/

To obtain the oid, execute the following command in psql prompt

postgres=# select oid,datname from pg_database order by oid;

   oid  |         datname

---------+--------------------------

1 | template1

10792 | template0

10793 | postgres

16497 | gadgetwi_Unable

16589 | vimusicc_filehost

16702 | personea_altissimo

16764 | shopping_businessfinance

16785 | ansonyi_wp2

16786 | ansonyi_wp

19992 | globook_PostgreSQL

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